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I did not find a way to increase the maximum indel size in the site or as an option in the command line version. I am interested in deletions generally...

doctorksk

AttributeError: 'MultipleSeqAlignment' object has no attribute 'format'

7

Hi Thanks for sharing this tool. After installation when running the example I get the following error: ``` $ synthego_ice --control ./ice/tests/test_data/good_example_control.ab1 --edited ./ice/tests/test_data/good_example_edited.ab1 --target AACCAGTTGCAGGCGCCCCA --out results/testing --verbose Synthego...

kiavash17

Hi, I am trying to extract the knockout score for a sample run as an individual sample. Can you please let me know which json file to parse? Thanks

sharvari14

Hi, Can you please point me to the GitHub link for ICE v3? Thanks

sharvari14

I get the error in the title. I dont see it listed exactly the same way in the websites troubleshooting guide. The wording is a little weird so Im wondering...

niko-balanis

Hi there, we recently encountered a problem running ICE (v1.2.0). See the error below: ------- Traceback (most recent call last): File "/ice/ice/analysis.py", line 82, in single_sanger_analysis sa.analyze_sample() File "/ice/ice/classes/sanger_analysis.py", line...

peilin-ice

Dear ICE devs, I just noticed `python ice_analysis_single.py --version` says 1.2.0. Just curious what's been changed since v1.1.0? Thanks, Pei

peilin-ice

i got it working, can you share the part to make the graphics like you have in the web server from contrib.txt thanks

yinshiyi

Putting this as a new feature request or question, as a lot of our users are asking for it. In knockin experiments scientists want to check the actual inserted sequence....

mike-gabriel-fci

Analysis failed with 311 in the notes

2

Hi there, we use ICE with docker install. It is very easy and fast to use, thanks! I am curious what exactly the error was if a sample failed analysis....

peilin