svc-jstone

Hi @ChristianKniep , How long did you leave it running before observing this behavior? I.e. has the run completed and was the GPU utilization low throughout the entire run? There...

Hi @ChristianKniep , Apologies for a late response - have you managed to get around the problem in the meantime? Could you try out the new version of Dorado which...

Hi @eernst , `dorado polish` will use `!` for locations of zero coverage where the output bases are (by default) copied (gap-filled) from the input draft sequence (`!` is used...

Thanks! In this case there might be a bug somewhere. Any chance you can share data for a small contig which exhibits this issue so we can look into it...

Hi @GabeAl , It's not clear which specific tool you are referring to. In `dorado correct` for example, we cannot use the common `gzip` compression because it does not allow...

Hi @GabeAl, if I understood correctly, you are running multiple individual `dorado correct` processes on the same input FASTQ file which does not yet have an index on disk, and...

Hi @gwaldbieser , that's a strange error. We're looking into it. Thanks for reporting this!

HI @gwaldbieser , Is this issue reproducible with any of the newer versions of Dorado? The latest one, v1.0.1, was just released: https://github.com/nanoporetech/dorado/releases Thank you in advance!

Hi @yusmiatiliau , I need to reproduce this issue locally to fix it. Is there a chance you can share some of your data? If you can localize the issue...

Thank you for doing this! I managed to reproduce your issue locally using the data you shared. Will investigate.