svc-jstone

This issue has been inactive for a while now, we will close it. If needed, please reopen it.

Since this issue was opened, several releases of Dorado came out - including the latest `v0.9.5` which has improvements to both the overlap and the correction stages. If the issue...

If this issue still persists, please reopen it. Since it has been stale for a while, I will close it now due to inactivity and lack of feedback.

Hi @arslan9732, How big is the PAF file you generated? One thing I noticed in your workflow from above is that you're not sorting the PAF file by target name....

Glad to hear you figured it out! You can try `dorado v0.9.5` which was just released, it has significant performance improvements for both the inference and overlapping steps. If you...

I'm closing this issue because it appears to be resolved and is becoming stale. Please feel free to reopen it if the issue persists.

Hi @mmudado, Can you try this with the latest version of Dorado, v1.2.0? I noticed you ran it with Dorado v1.1.0. There was a bug in versions

Hi @mmudado , thanks for following up! Can you copy your exact commands for case `ii)`? (The Dorado Aligner one is obvious from the log, but I'd like to see...

That's odd. How big is your `hifi_ul.aligned_reads.tmp.bam`? Is it possible that you ran out of disk space so your data ended up truncated? > This time I tried to run...

Hi @diego-rt! Thanks for experimenting with this, this is an interesting problem to solve. The PAF file should be formatted like this: - Sorted by target name. - Not contain...