Suzanne Jin

Bayesian inference of gene expression states from single-cell RNA-seq data source: https://github.com/jmbreda/Sanity.git ### Is there an existing module for this? - [X] I have searched for the existing module ###...

This is a module to normalize scRNA-seq data. source: https://cran.r-project.org/web/packages/sctransform/index.html template: check differential/differential module ### Is there an existing module for this? - [X] I have searched for the existing...

This is a module to normalize scRNA-seq data by pooling and computing size factor. source: https://bioconductor.org/packages/release/bioc/html/scran.html template: check differential/differential module ### Is there an existing module for this? - [X]...

This is a module to normalize RNA-seq data by effective size factor. The method is called the trimmed mean of M-values. source: https://www.bioconductor.org/packages/devel/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pdf template: check differential/differential module ### Is there...

## propr 5.0.5 --------------------- * Allowed `updateCutoffs` function to compute FDR on negative values, when asked * Changed `runCutoff` into `getCutoffFstat` * Added `getCutoffFDR` to get a significant cutoff based...

[dev-ratio] simplified toolsheet structure, and modified the subworkflows accordingly

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Hello! Just restructured the toolsheet into the following three blocks: 1- differential analysis 2- correlation analysis 3- enrichment analysis Also the subworkflows were modified accordingly to accomodate for the new...

This module is used to create a .gmt file given a list of genes. Currently, it only parses info from GO terms. Ideally, one can chose to parse info from...

- [ ] Use the code from the local version of the module `PROPR/GREA` inside `nf-core/differentialabundance` - `dev-ratio` branch to update the nf-core version + add nf-test + etc -...