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[dev-ratio] simplified toolsheet structure, and modified the subworkflows accordingly

Open suzannejin opened this issue 4 months ago • 2 comments

Hello! Just restructured the toolsheet into the following three blocks: 1- differential analysis 2- correlation analysis 3- enrichment analysis Also the subworkflows were modified accordingly to accomodate for the new block structure.

In the coming days I will update the modules from these three blocks as well (maybe first as local modules), and then change the arguments from the toolsheet accordingly.

PR checklist

  • [x] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • [ ] If necessary, also make a PR on the nf-core/differentialabundance branch on the nf-core/test-datasets repository.
  • [x] Make sure your code lints (nf-core lint).
  • [x] Ensure the test suite passes (nf-test test main.nf.test -profile test,docker).
  • [ ] Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • [ ] Usage Documentation in docs/usage.md is updated.
  • [ ] Output Documentation in docs/output.md is updated.
  • [ ] CHANGELOG.md is updated.
  • [ ] README.md is updated (including new tool citations and authors/contributors).

suzannejin avatar Oct 02 '24 13:10 suzannejin