differentialabundance
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[dev-ratio] simplified toolsheet structure, and modified the subworkflows accordingly
Hello! Just restructured the toolsheet into the following three blocks: 1- differential analysis 2- correlation analysis 3- enrichment analysis Also the subworkflows were modified accordingly to accomodate for the new block structure.
In the coming days I will update the modules from these three blocks as well (maybe first as local modules), and then change the arguments from the toolsheet accordingly.
PR checklist
- [x] This comment contains a description of changes (with reason).
- [ ] If you've fixed a bug or added code that should be tested, add tests!
- [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
- [ ] If necessary, also make a PR on the nf-core/differentialabundance branch on the nf-core/test-datasets repository.
- [x] Make sure your code lints (
nf-core lint
). - [x] Ensure the test suite passes (
nf-test test main.nf.test -profile test,docker
). - [ ] Check for unexpected warnings in debug mode (
nextflow run . -profile debug,test,docker --outdir <OUTDIR>
). - [ ] Usage Documentation in
docs/usage.md
is updated. - [ ] Output Documentation in
docs/output.md
is updated. - [ ]
CHANGELOG.md
is updated. - [ ]
README.md
is updated (including new tool citations and authors/contributors).