Susheel Bhanu Busi
Susheel Bhanu Busi
Hey there.. Thanks the nice tool. Is there a way to run the final matrix in a parallel or multi-threaded manner. I have the following with a lot of rows...
Hey @MrOlm, I'm running `dRep` via snakemake with the following: ``` Job 0: Running dRep on all NOMIS MAGs Reason: Forced execution (date && dRep dereplicate $(dirname /scratch/users/sbusi/nomis_mags/results/Bins/dRep/dereplicated_genomes) \ -p...
Hi, I'm sorry about the very trivial question but I was wondering what the data format should be for running KRONA using the Kronatools on linux. [krona_test.txt](https://github.com/marbl/Krona/files/1314990/krona_test.txt) I have attached...
Hi, I am running 2 sets of samples. I've run them previously and in both cases, there was no contigs.fasta file in the output folder. I had individual contigs.fasta files...
Hi, I'm running version `0.1.26` and I'm getting the same error as #47 part of error message is below: ``` ERROR 06/07 22:04:58 pfam_id Traceback (most recent call last): File...
Hi, I have a ~150 samples of protein fasta files, which I'd like to generate a non-redundant set of proteins from. I have tried concatenating the files to run the...
Hi, I'm looking to implement this analyses on a dataset that i have. However, it is unclear how you went from, say a table of count data and metadata to...
Hi @agudys, Thanks again for fixing the earlier issues with the output directory. There still exists a potential issue, where `all` the files and folders in the input folder are...
Hi, As asked in #3, is it possible to parallelise this on a linux machine? Thank you, Susheel
Hi, In your example, the path to the export function is slightly off. Could you please update it to the following: ``` export PERL5LIB=/path/to/perl5lib-Fasta/lib:$PERL5LIB ``` Thank you, Susheel