Surabhi Ranavat

I am facing the same issue, has anyone managed to find a solution for this?

Hello, I am getting the following error which looks similar to the one above: `Traceback (most recent call last): File "/srv/home/sran0007/./HiCExplorer/bin/hicBuildMatrix", line 4, in from hicexplorer.hicBuildMatrix import main File "/srv/home/sran0007/.local/lib/python3.10/site-packages/hicexplorer/hicBuildMatrix.py",...

I asked the Nanopore support team for recommendation and here's what they said: You can either use simplex or duplex. But avoid using both to remove data redundancy. In case,...

Hi Chenxi, I had the same problem with two misjoins between the 1st and 2nd scaffold, and the 3rd and 4th scaffold (expected chromosome number is 9) using v1.2 for...

@xiekunwhy Thank you for the suggestion!

I'm facing the same issue, and even tried what @c-zhou suggested, but my alignments.txt file is empty. Did anyone figure out a solution? I'm using YaHS v1.2. Thanks, Surabhi

I just used the BAM file instead of the BIN file for juicer pre, that works as well, so I guess my problem lies in the BIN file.