Andrew Z. Summers

That could be useful for a smarter way of splitting the Compound. I had just been thinking of the simple case where you could break apart a Compound into equal...

Along with this, being able to add Compounds together using a simple `+` operator would be useful (in the same way this is possible for Parmed Structures).

There isn't currently a way to specify particles in rigid bodies by index, but that is something that would probably be good to add. I see where the current functionality...

Yes, just passing `add_bond` to `force_overlap` was what I had in mind. Not sure what the best approach is concerning controlling bonding of `guest` vs. `backfill`. Adding two arguments (e.g....

I'm pretty sure I experimented with this locally several years ago. I'll see if I can find what I did (it might just be on an old branch), but either...

It looks like the rigid body types that will be needed in the XML file are essentially the same as the compound names that are provided to `label_rigid_bodies()` via the...

We could maybe approach this by utilizing the method Ahmed was using for interface detection for his dynamic cutoff work.  (Image taken...

Charge neutrality is already being checked if saving from an mBuild Compound. However, since Foyer supports atomtyping of more than just mBuild Compounds, perhaps removing [these lines of code](https://github.com/mosdef-hub/mbuild/blob/master/mbuild/compound.py#L1343-L1346) from...

Hey @yzhao062, sorry for jumping in unannounced with this. I have been using the `AutoEncoder` detector in `pyod` recently (awesome library you've created!) and noticed a problem with the number...

No problem. I've changed the base branch to the development branch. I don't see any automatic CI test runs, so I'll close and reopen to see if that triggers them....