sumin5784

Hello, I also have some Qs about data format for fine-tuning. What exactly the label means? It's only 1 and 0 in label, so the data has only two classes?

I realized that my fast5 does not contain basecalls issue, while it was running, guppy generate basecalls separately in fastq, thus my fast5 does not contain any basecalls inside. So,...

Yes, I did demultiplex mutli-fast5 file to single fast5 files.

I think it's already installed? Here's output: pip install "numpy

I checked those issues, but I think I'm running re-squiggle in correct environment. I had issues about hdf5 plugins, so I created virtual environment for tombo, and installed everything for...

I thought those outputs having errors or whatsoever. Thank you so much Marcus!

I have a quick question. So, I'm a bit confused where the re-squiggled outputs are stored? I thought, the fast5 files in --fast5-basedir are resquiggled fast5 file after re-squiggling. Then,...

Thank you for the clarification, Chris-Kimmel :)

Could you help me to figure out the reasons why I get weird resquiggle results? ## Here's installation processes I did. wget https://repo.continuum.io/archive/Anaconda3-5.0.1-Linux-x86_64.sh bash Anaconda3-5.0.1-Linux-x86_64.sh conda update --all conda config...

Hello, I think I'm having similar issue. What exactly the expected output of TPMCalculator is? Could you specify number out output files and formats? Or do I have to specify...