stroke1989
stroke1989
@yulijia Hi, to generate sequence-accessible coordinates file, a file of regions of poor mappability is needed. Where I can get this file for hg38? Hope your response!
I got the same error 55 of 57 steps (96%) done rule predict_test: input: data/2020plus_10k.Rdata, output_bladder/features.txt, output_bladder/simulated_summary/simulated_features.txt output: output_bladder/pretrained_output/results/r_random_forest_prediction.txt python `which 2020plus.py` --log-level=INFO classify --trained-classifier data/2020plus_10k.Rdata --null-distribution output_bladder/simulated_null_dist.txt --features output_bladder/simulated_summary/simulated_features.txt...
finally, I get out this mud and run sucessfully. the version of python moduls I install were as following: python 3.6.9 matplotlib 3.1.1 numpy 1.15.4 pandas 0.25.2 pip 21.3.1 probabilistic2020...
Great! excellent job