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No such file or directory in 'feature file'

Open a00101 opened this issue 4 years ago • 10 comments

I got error below. Can you help me out?

Thanks.

python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary2.txt --tsg-test output_bladder/simulated_summary/tsg_sim2.txt -og-test output_bladder/simulated_summary/oncogene_sim2.txt   -o output_bladder/simulated_summary/simulated_features2.txt
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
python: can't open file 'features': [Errno 2] No such file or directory
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features8.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features7.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features4.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features6.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features1.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features2.txt.
Error in job simFeatures while creating output file output_bladder/simulated_summary/simulated_features10.txt.
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary6.txt --tsg-test output_bladder/simulated_summary/tsg_sim6.txt -og-test output_bladder/simulated_summary/oncogene_sim6.txt   -o output_bladder/simulated_summary/simulated_features6.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary10.txt --tsg-test output_bladder/simulated_summary/tsg_sim10.txt -og-test output_bladder/simulated_summary/oncogene_sim10.txt   -o output_bladder/simulated_summary/simulated_features10.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary7.txt --tsg-test output_bladder/simulated_summary/tsg_sim7.txt -og-test output_bladder/simulated_summary/oncogene_sim7.txt   -o output_bladder/simulated_summary/simulated_features7.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary8.txt --tsg-test output_bladder/simulated_summary/tsg_sim8.txt -og-test output_bladder/simulated_summary/oncogene_sim8.txt   -o output_bladder/simulated_summary/simulated_features8.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary2.txt --tsg-test output_bladder/simulated_summary/tsg_sim2.txt -og-test output_bladder/simulated_summary/oncogene_sim2.txt   -o output_bladder/simulated_summary/simulated_features2.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary1.txt --tsg-test output_bladder/simulated_summary/tsg_sim1.txt -og-test output_bladder/simulated_summary/oncogene_sim1.txt   -o output_bladder/simulated_summary/simulated_features1.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
RuleException:
CalledProcessError in line 202 of /addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile:
Command 'python `which 2020plus.py` features   -s output_bladder/simulated_summary/chasm_sim_summary4.txt --tsg-test output_bladder/simulated_summary/tsg_sim4.txt -og-test output_bladder/simulated_summary/oncogene_sim4.txt   -o output_bladder/simulated_summary/simulated_features4.txt' returned non-zero exit status 2.
  File "/addData01/01_Program_to_install/63.2020plus/2020plus-master/Snakefile", line 202, in __rule_simFeatures
  File "/root/anaconda2/envs/2020plus/lib/python3.6/concurrent/futures/thread.py", line 56, in run
Will exit after finishing currently running jobs.
Exiting because a job execution failed. Look above for error message

a00101 avatar May 18 '20 00:05 a00101