Michal Stolarczyk
Michal Stolarczyk
**Is your feature request related to a problem? Please describe.** The lint action does not show the lines that are the subject of the warnings.  **Describe the solution you'd...
we should consider serving FASTA `.dict` files Based on what [GATK docs](https://gatk.broadinstitute.org/hc/en-us/articles/360035531652-FASTA-Reference-genome-format) say it would make sense to put them in the fasta asset: >Most GATK tools additionally require that...
We've realized identical assets happen to produce different md5 checksums. That's because some of the tools used to build the assets (specified in the recipes) output run-specific information in the...
The asset checksum uniquely identifies it but does not record information about how it was made. what if I want to check that the input file used to create asset...
It would be nice to generate some sort of [this page](http://refgenie.databio.org/en/latest/available_assets/) automatically, based on the set of available recipes. This will come in handy once the recipes are no longer...
btw shoud we use `sha256sum` instead of `md5` since md5 seems to be deprecated? _Originally posted by @nsheff in https://github.com/databio/refgenie/issues/107#issuecomment-524828168_ - [ ] archive digests - [ ] asset digests
raised in a discussion with @nsheff in lieu of combined tarballs of all assets for a genome (https://github.com/databio/refgenieserver/issues/18#issuecomment-497099152) we need a way to pull _all_ the assets for a genome....
When you build multiple assets at once: ``` refgenie build -g rCRSd -a bwa_index bowtie2_index ``` the `bwa_index` log is appended with the `bowtie2_index` one. Generally the logs are written...
First of all, thanks for developing this project, it seems to be really useful. My question is whether there's a way to increase mkdocstrings verbosity in mkdocs output. When I...
empty dir ``` [mjs5kd@udc-ba36-36 new](master): ll total 8.0K drwxrwxr-x 2 mjs5kd users 0 Nov 18 13:01 . drwxrwxr-x 3 mjs5kd users 4.5K Nov 18 12:55 .. ``` `encode_downloader.py` run ```...