Tamás Stirling

pc_sect() fails when requesting cas for cid 132971

2

I found an example where `pc_sect()` fails unexpectedly. ``` r webchem::pc_sect(132971, "cas") #> Error in if (is.character(txt) && length(txt) == 1 && nchar(txt, type = "bytes") < : missing value...

Functions for accessing a new database - ChEMBL

3

This PR adds new functionality for accessing the ChEMBL database (https://www.ebi.ac.uk/chembl/). The database developers created an API for retrieving the data (https://chembl.gitbook.io/chembl-interface-documentation/web-services), which I think evaluates to explicit consent to...

Increase test coverage

4

webchem's test coverage has fallen lately. The rOpenSci policy is 75% so let's bring it up to at least 75%. https://devguide.ropensci.org/building.html#testing

Importing functions from other packages

5

I've recently read an interesting article about connecting to other packages: https://kbroman.org/pkg_primer/pages/depends.html I do revisit functions quite often to see if `@importFrom` or `@import` were added, and to me this...

ACToR

1

"EPA’s Aggregated Computational Toxicology Online Resource (ACToR) aggregates data from thousands of public sources on over 500,000 chemicals. It is searchable by chemical name and other identifiers. ACToR is also...

Hi, I am trying to use prokka to annotate a bacteriophage genome. The following command runs through `prokka phage_genome.fasta --kingdom Viruses --gcode 11` however, everything is annotated as "hypothetical protein"....

ValueError: zero-size array to reduction operation minimum which has no identity

1

Many thanks for developing this tool! I am currently receiving the following error message: `ValueError: zero-size array to reduction operation minimum which has no identity` I looked at the related...

The example in the `get_map()` documentation produces an error in my environment and it seems I cannot get a map with this function at all. For some reason reprex does...

Related to #778 **Describe the Bug** I have another issue with submodules. I can open the the git graph for both the main repo and the submodule that's fine. When...