Stephen Rong

In the gnomAD v2.1 per-gene constraint file, TMSB4Y seems to have nonsensical negative values for exp_syn (-6.83E-02) and oe_syn (-2.93E+01).

There seems to be a problem with the -g flag (exponential growth rate) when set before the initial -n flags, as in the example given in the manual itself (pg...

I'm running into cases where neighboring SNPs have the same position float due to the output rounding to only 5 decimal places, which results in some problems in my downstream...

Problem with ensDbFromGff using recent ensembl gff files

19

I'm having troubles with ensDbFromGff for some gff3 files downloaded from Ensembl ftp. For example, Danio rerio in Ensembl versions 94, 95, and 96 (but not Ensembl versions 93, 92,...