Stefano Mangiola

Effectively use batchtools for Targets-based workflow in SLURM

4

Thanks for the great package. We are converting a makeflow workflow to R using `targets` + `batchtools`, for a SLURM system. However, we find practically unusable because the job that...

Use pillar to make column titles red

1

Hello, I would like to use `pillar` to make the column titles of a tibble red. Is this possible?

Play the same strategy we have applied for the immune map paper to resolve two confounding factors that are not of interest. `simplify_design_matrix(suffix = "__simplified")` This function will take a...

Improve the documentation for `tidybulk`

29

- improving examples for methods - solving documentation warnings (when packages are loading or installing) - Improving methods' argument description - improving the transparency of the method used in the...

When using quosures to define the .abundance_scaled column name in the internals, the environment gets carried along and a 1 Mb SummarizedExperiment becomes a 400Mb RDS file. it can be...

Hello @mblue9, I have a mystery, and I was wondering if you're careful and fresh, I can spot where the arrow is. https://github.com/stemangiola/tidybulk/actions/runs/5369140637/jobs/9740360362?pr=272#step:20:564 I have this WARNING just for the...

Hello All, I was wondering if there is any effort to port some of the squidpy tools (e.g. segmentation) to R. For example as Velociraptor R package does for scvelo....