Stefano Mangiola

Build response to annotations discrete or continuous including Na or NaN. At the moment Heatmap fails with ungly error

Better error if group_by and annotation refer to the same variables

1

``` > tidyHeatmap::heatmap( + dplyr::filter(tidyHeatmap::N52, Category == "Angiogenesis") %>% group_by(UBR), + .row = UBR, + .column = symbol_ct, + .value = `read count normalised log`, + annotation = CAPRA_TOTAL, type...

Tis should work similarly to the function `s_` of tidySE

Use feature instead of transcript

1

Since tidy* packages were converted to feature vocabulary, at some point we should adapt tidybulk too. @mblue9 concerns?

`tidybulk` Replace pivot_* with select_columns_*

3

I think subset_transcripts and subset_samples would be more clear and in line with tidyverse. @mblue9 concerns?

Feedback from talk: get_bibliography

1

@mblue9, FYI at the Monash talk I received very good feedback about get_bibliography. I was suggested to include what methods/functions are related to each bib citation, for giving the opportunity...

for scaling check the presence of a multiplier column

1

And do this in general when columns are created.

Unexpected behaviour

1

Hello thanks for the tool. When I run liger through SeuratWrappers regressing for (i) total reads per cell and (ii) mitochondrial percent I get a stringy UMAP plot. While I...

bring add_count to service package