Stephan Erbe

I have a problem with UMI normalization with different biological replicates. I have 3 control samples and 5 treatments. My approach is the following: 1. Normalization of each sample 2....

[BUG] pyscenic.transform warning/error

1

I got thousands of these warnings when I run pyscenic ctx on linux (ubuntu 22.04) CLI (conda environment): `pyscenic.transform - WARNING - Less than 80% of the genes in some_gene...

I used pyscenic ctx in CLI and my output has AUC values (third column) What does this mean exactly? I only have values below 0.4. This means that all regulon...