Stefano de Pretis

icon indicating a website link https://scholar.google.it/citations?user=fy5RYKcAAAAJ&hl=it icon indicating an email [email protected]

icon location Milano icon location Bioinformatician dedicated to genomic studies

Results 3 issues of Stefano de Pretis

Music2 bug in "music2_prop_t_statistics" function

5 comment

Error: ``` Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘exprs’ for signature ‘"matrix"’ ``` Raised from: https://github.com/xuranw/MuSiC/blame/0a3e3af45d4bd018939013660a3e83e580fa3bac/R/music2.R#L340 The actual code tries to...

list of real barcodes for Drop-seq technology

1 comment

Hi everybody, I'm trying to use your pipeline to analyze **Drop-seq** data with velocyto, but at the time of running **dropEst** we realized that the **file with the list of...

Failure to load cellular barcodes containing Ns

3 comment

Hi everybody, Running chromap in the scATAC modality with the command: ``` chromap -q 0 -t 8 --min-read-length 20 --preset atac --SAM -x ${index_file} \ -r ${fasta_file} -1 $r1 -2...

bug