Alexis Stamatakis

this is for a specific use-case, i.e., placing a couple of potential outgroups (genome-size sequences) into an ingroup phylogeny, we don't need it super-urgently nor do we need it to...

Fast support measures

1

There now is an entire zoo with fast support measures, e.g., aLRT test and derivatives thereof, ultrafast bootstrap (probably not applicable due to the nature of the search algorithm), quartet-based...

e.g., C10-C60 and other protein mixture models?

Might require some changes to the llpll, see related paper here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604832/

I.e., not repeats, but missing data, terraces, trading computation fro memory (Fernando's old paper).

Discuss discrete tree operations.

2

A lot of discrete tree operations (IC/TC scores, tree plausibility analysis) and some new stuff (quartets and this paper here http://www.biorxiv.org/content/biorxiv/early/2017/06/23/154542.full.pdf) should not go into raxml-ng but rather to the...