Alexis Stamatakis

Dear Cornelius, I am appreciate your efforts, but standard RAxML is not being maintained any more it has been replaced by a total re-write called RAxML-NG: https://github.com/amkozlov/raxml-ng My obligations unfortunately...

I have added a note that it's no longer being maintained.

Maybe, for a 5000 sequences reference tree you should also take the tree inference uncertainty into account, see for instance here: https://academic.oup.com/mbe/article/38/5/1777/6030946 and also our new tool for predicting the...

Dear Kevin, Yes, this is normal since the difficulty prediction for the MSA is based on quite a few parsimony tree inferences, normally you would not notice, but on such...

Dear Andreas, I probably meant basename, yet ExaML is not being maintained any more, it's supercomputing functionality has been fully implemented in RAxML-NG which now scales from the laptop to...