Sara Sjunnebo

From RT: Hi there. Thanks for the snpsites program, very helpfull. I havent been able to pipe (|) into snp-sites yet, how can this be done? Otherwise I would strongly...

Question about ariba summary

3

Query from RT: I don’t understand a summary ariba is running, where what looks like good hits get discarded. If I look at e.g. ariba_BBVQ01_ariba_eff_out/report.tsv the hits for cluster 38...

From a recent path-help ticket: I have a strange occurrence in ariba, where it assembles the gene correctly, but does not flag the variance mutation (even though the assembled gene...

get_sequence_types only writes N for some fasta

2

From RT 640278: I am running get_sequence_type on a list of assemblies. It calls the STs for all, but for some fastas it only writes N as allele output, in...