Pipe into snp-sites

[ssjunnebo]

From RT: Hi there.

Thanks for the snpsites program, very helpfull. I havent been able to pipe (|) into snp-sites yet, how can this be done? Otherwise I would strongly recommend it.

The example on https://github.com/sanger-pathogens/snp-sites makes no sense to me, which command was used here?

Thanks.