Sricharan Reddy Varra
Sricharan Reddy Varra
When concatenating multiple tables from `spatialdata.aggregrate`, an error is thrown when using a custom region key. Reproducible example: ```python import pathlib import spatialdata as sd import natsort as ns mibitof_zarr_path...
Thanks for developing SpatialData! It's been a very ergonomic experience so far trying to convert a small subset of our lab's current multiplexed imaging pipeline as a MVP for testing....
When using `pl.render_labels` with the `color` and `palette` parameter, the legends are incorrectly colored. Example Plot:  Here we see that the Dot plot from `scanpy` counts 1.1K cells in...
**If you haven't already, please read through our [contributing guidelines](https://ark-analysis.readthedocs.io/en/latest/_rtd/contributing.html) before opening your PR** **What is the purpose of this PR?** Updates the GitHub workflows to account for recent publishing...
**Is your feature request related to a problem? Please describe.** Update GitHub Actions workflows: - [GitHub Actions' OpenID Connect](https://docs.github.com/en/actions/deployment/security-hardening-your-deployments/about-security-hardening-with-openid-connect) - Upload Built distributions to a new GitHub Release **Describe the...
*This is for internal use only; if you'd like to open an issue or request a new feature, please open a bug or enhancement issue* ### Instructions This document should...
**Is your feature request related to a problem? Please describe.** The option to filter FOVs would be a nice addition for the neighborhood analysis workflow, as some FOVs may not...
If I have an `AnnData` object, is it possible to manually assign colors for the different cell categories? I tried taking a look at `obsSetColor` but I wasn't able to...
**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] It'd be elegant to...
**If you haven't already, please read through our [contributing guidelines](https://ark-analysis.readthedocs.io/en/latest/_rtd/contributing.html) before opening your PR** **What is the purpose of this PR?** Docker is no longer necessary for Ark Analysis. Windows...