spatel-gfb

Thanks @droazen and @nalinigans , I will try it out and get back with results.

Hello @droazen and @nalinigans , we tried out the parameter you suggested and did improve the performance but not as great as compared to writing the data locally and then...

Thanks @nalinigans , will it also help in Importing VCFs to the genomics db ?

Hello @nalinigans, As part of gatk-sv pipeline we are using GATK : v4.1.8.1 which doesn't have bypass-feature-reader option. Also, we didn’t capture strace for the run with just "--genomicsdb-shared-posixfs-optimizations" so...

Thanks @ldgauthier , we will try that option out in few weeks. For now as a work-around for this, we are writing it to local EBS volumes which gives best...