starfish
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starfish: unified pipelines for image-based transcriptomics
After working with starFISH extensively there have been a few bugs/lack of features that I've noticed and simply fixed for myself. This PR contains 3 such changes plus a small...
Bumps [mistune](https://github.com/lepture/mistune) from 0.8.4 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...
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Bumps [mistune](https://github.com/lepture/mistune) from 0.8.4 to 2.0.3. Release notes Sourced from mistune's releases. Version 2.0.2 Fix escape_url via lepture/mistune#295 Version 2.0.1 Fix XSS for image link syntax. Version 2.0.0 First release...
Hi, I was trying to work through the input data formatting and found that the links to the raw data to some of the sample datasets do not work. E.g.:...
testing whether sphinx will build with napari screenshots
the intended specification for the codebook included non-integer values, but the current implementation uses integers when creating the `Codebook` object from a .json file. Non-integer values already work as desired...
I have added two simple methods to save `SpotFindingResults` to disk and reload them. This is handled by calling the methods in `physical_coord_ranges`, `log`, and `_results` to save each object,...
As scikit-image and Python versions continue to be updated, it is no longer feasible to use scikit-image 0.15.0 to get around . This pull request will make starfish compatible with...
#### Description "ValueError: in1 and in2 should have the same dimensionality" error is thrown when "is_volume=True" when running Filter.DeconvolvePSF. Function works correctly when is_volume = False Filtering images using Filter.GaussianHighPass(is_volume=True)...
