Lior Glick
Lior Glick
I am having trouble with a Newick file from a specific (but rather central) resource. Problem is described [here](https://www.biostars.org/p/9517775/). Any chance you can help with that? Thanks!
I ran MEGAHIT on a 50x WGS data set (plant genome), and then on the same data set subsampled to 20x. Surprisingly, I got slightly higher N50 and larger assembly...
Hello, I am trying to use megahit as part of a larger analysis pipeline, and have encountered a strange behavior. I produced a test set using the following steps: 1....
Hello, As far as I understand, currently (v1.1) the only way to control the gap between contigs is by setting a uniform gap size through the padding parameter. It could...
This is a feature request - as of v1.1 the order of the contigs in each pseudomolecule is given in a separate TSV file. I think it would be more...
Hello, I ran RaGOO v1.1 with default parameters: `python ragoo.py contigs.fasta ref.fasta -t10` I looked for two specific contigs in the results which I know should map one after the...
Hello, I am having some trouble when I try to give QUAST pre-computed alignments with the --bam option. The run completes successfully, but does not produce any stats about read...
Since there are data deposited in [GSA](https://ngdc.cncb.ac.cn/gsa/browse/CRA002276) but not in SRA/ENA, it would be useful to add the option to download from GSA. I was able to use Aspera for...
Hello, I ran GAWN using A. thaliana reference transcripts on a genome assembly from the same species. I notice quite a few cases in which transcripts seem to map very...
Hello, I ran FastQC (v0.11.8) on [PacBio CLR data](https://github.com/PacificBiosciences/DevNet/wiki/Microbial-Multiplexing-Data-Set---48-plex:-PacBio-Sequel-II-System,-Chemistry-v2.0,-SMRT-Link-v8.0-Analysis) like this: `fastqc -f bam lima.bc1087--bc1087_subsample.bam -t 10` The analysis completed successfully, but the resulting HTML report has the "Per base...