sopenaml

Quantification after creating an index supplemented with bam files produces NAs in evens of interest

3

Hi, I'm interested in quatifying the PSI of a 5' splice site in a particular gene. The event is not in my annotation, but I can see that it's used...

Percentage unmapped: 100

18

Hi, sorry for asking again, but after going through the previous answers I have not found the answer that solves my problem. I have data that contains: HTOs, ADTs, 5'...

some parameters are set to the CSIDE vignette values, which are intended for testing but not proper execution.

6

Hi, Thank you very much for developing these great packages. Could you elaborate why the following warning? `Warning message: In run.CSIDE.general(myRCTD, X1, X2, barcodes, cell_types, cell_type_threshold = cell_type_threshold, : run.CSIDE.general:...

Error in handle_design_parameter(design, data, col_data, reference_level) : Too few replicates / too many coefficients to fit model.

1

Hi Constantin, Thank you very much for glmGamPoi! I've been trying to get it work on a dataset I have, where I have 9 clusters for 2 genotypes, 3 replicate...