sopenaml

Thank you for your answer. There are split reads that I can see on IGV and I don't think there are few, see attached picture. The exon of interest is...

Hi, Sorry to bother you, but I was wondering if you have received my message and had any insights as to why whippet does't quantify the splicing event I'm interested...

grep "barcode_of_interest" your.fastq_R2.file | head -n 20 that should print reads containing your barcodes and to know where to trim, count the bases from the left of the sequence until...

In that case I'm not sure maybe the developers would answer? I'll try sliding window, as I've seen messages in the channel suggesting that. ________________________________ From: Dianita Susilo Saputri ***@***.***>...

Hi Patrick, I'm not sure which barcodes you are referring to, are you asking me to check if the antibody barcodes appear in R1 somewhere? Thank you for your help,...

Hi Patrick, I've checked my cite-seq ab barcodes agains R1 and I don't see any matches. If I check my cell hashing barcodes, there's one that finds few (7 )...

Hi, I'm afraid I didn't get an answer/solution. My suspicion is that, at least in my case, the ADTs only label a small proportion of the cells so I was...