Suren

Hi, I performed canu assembly and trying to circularize the 1.54Mb contiguous with following one of the parameters: circlator all --assembler canu --data_type pacbio-corrected --bwa_opts "-x ont2d" ---b2r_length_cutoff 30000 merge_min_id...

HELP!!!!!!terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_S_construct null not valid

7

quickmerge -d out.rq_1.delta -q /ufrc/pelzstelinski/sneupane/Analysis_of_Demultiplexed_10_wDi_DNA_HMW_Unpure_1st_Elution/wDi_canu_seqtk45_CCS_1000_corr0.015_500_100_GOOD/uni_corrected/assembly_edited.fasta -r /ufrc/pelzstelinski/sneupane/Analysis_of_Demultiplexed_10_wDi_DNA_HMW_Unpure_1st_Elution/wDi_canu_seqtk45_CCS_1000_corr0.015_500_100_GOOD/wDi.contigs.fasta_headeredited_spaceremoved.fa -hco 5.0 -c 1.5 -l 1250000 -ml 10000 0 quickmerge 1 -d 2 out.rq_1.delta 3 -q 4 /ufrc/pelzstelinski/sneupane/Analysis_of_Demultiplexed_10_wDi_DNA_HMW_Unpure_1st_Elution/wDi_canu_seqtk45_CCS_1000_corr0.015_500_100_GOOD/uni_corrected/assembly_edited.fasta 5 -r 6 /ufrc/pelzstelinski/sneupane/Analysis_of_Demultiplexed_10_wDi_DNA_HMW_Unpure_1st_Elution/wDi_canu_seqtk45_CCS_1000_corr0.015_500_100_GOOD/wDi.contigs.fasta_headeredited_spaceremoved.fa 7...