Steffen Neumann

Events Page without SchemaOrg markup

1

Hi Galaxy-Hub Team, The Galaxy Event page is listed in the live-deploys page https://bioschemas.org/developer/liveDeploys#nav-site (go down to "Galaxy Project", expand the details, and see the link behind the "Page" button....

Hi, this PR on top of #41 adds the option to search a custom OLS3 endpoint defined in the settings sheet. This serves two use case scenarios: 1) There might...

Update to OLS4 if needed

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Hi, on 30.10.2023 the OLS system will be upgraded to OLS4. Website promises: ``` Migrating to the OLS4 API should be as simple as replacing ols with ols4 in the...

Feature: add service.tib.eu/ts4tib as OLS endpoint

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Hi, https://service.tib.eu/ts4tib/ is a Terminology Service (TS) building on the OLS software system, including an API that is OLS compatible. While OLS is mainly targeting the life-sciences, the ts4tib provides...

Installation opentimsr: arguments (‘na.rm’) after ‘...’ must appear in the same place at the end of the argument list

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Hi, on R-4.3.3 I am getting: ``` R CMD INSTALL /tmp/opentimsr_1.0.13.tar.gz * installing to library ‘/usr/local/lib/R/site-library’ * installing *source* package ‘opentimsr’ ... ** using staged installation ** libs using C...

add the na.rm argument required by the range generic. Closes #25

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See `getGeneric("range")` for required method definition. Yours, Steffen

opentimsr not on CRAN anymore

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Hi, opentimsr was pulled from CRAN for some non-technical reason, what changes would be needed to comply with their guidelines ? Yours, Steffen

opentimsr: crash/segfault when downloading bruker.so twice

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Hi, the following code will reproducibly crash your R session: ``` library(opentimsr) so_folder

Use all factors as phenoData for XCMS

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Hi, Currently, processAssayXcmsSet() will obtain the first factor from the ISAtab and use it as sampclass() for the xcmsSet. It would be great if all factors were used. Below is...

otherwise some path error while creating xcmsSet