snackens

Hi, thank you for this excellent tool. I'd like to investigate each SNPs after extracted SNPs using snp-sites, but If I find interested SNPs, how can I know the location...

Hi, I'm using snippy-multi to obtain core-genome alignment and core SNPs among about 500 bacteria strains. I tried to run twice independently using same dataset and same parameters, but the...

Hi, Thank you for this convenient tool. Are there any way to ignore missing data(- or NA) in genotype data? I converted vcf to present/absent file. Some samples have missing...

@pievos101 Hi, Thank you for excellent tool. I would like to ask about site.FST. Which method is implemented to calculate Fst values per SNPs? Wier & Cockerham or something like...