smashpp

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Recommandation for eukaryotic species

2

Hi, are there any recommandation for eukaryotic species? I am currently comparing two highly similar eukaryotic genome sequences, but get no synteny nor any rearrangements at all? ``` wget http://ftp.ensembl.org/pub/current_fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz...

kullrich

Can Smash++ take reverse complement into account?

1

I was using Smash++ to identify rearrangements between a reference and a target genome. Unknown to me, the target sequence was actually on the - strand in the 3'-5' direction....

Sean-McGinty