smoretti

icon company SIB Swiss Institute of Bioinformatics icon location Lausanne, Switzerland icon location https://gitlab.sib.swiss/smoretti

Results 42 comments of smoretti

Extension of the Gene type expressedIn property

For example _hemoglobin subunit gamma_ gene is expressed only in fetal developmental stage, not in adult. Ovary and testis specific genes are expressed respectively in female and male sexes.

Wrong example name

Also the Checker.py example is wrong: Should be *python3 Checker.py --SuperFasta SuperDuper.fasta --SuperGff SuperDuper.gff* I guess. But in my case it returns: ``` Finding list of genes Producing match to...

General SBML unit question about second multiplier

I posted the same question as a BiGG github issue. The discussion is available here: https://github.com/SBRG/bigg_models/issues/267

ChEBI 240 release issues

Do you have a planned release date for ChEBI 240?

ChEBI 240 release issues

I saw on the FTP that ChEBI released version 241. Is it announced somewhere on the ChEBI website?

ChEBI 240 release issues

So the version is not specifically written on the ChEBI website since the X tweets are not directly visible anymore there, right?

ChEBI 240 release issues

This is where I found updates. Any plan to display it on the ChEBI website?

Compilation with -march=native option

So, on the same machine you recommend it over `-m64` for Linux (`CFLAGS="-O2 -m64"`)?

Compilation with -march=native option

OK, while waiting for more tests, will keep `CFLAGS="-O2 -m64"`

CHEBI:232875 ferric aerobactin, needs a review

Any news about this issue @amalik01 ? It also looks the MetaCyc compound has an issue with the Fe charge, it should not be -1 in the SMILES I guess....