Wrong example name

Open smoretti opened this issue 6 years ago • 1 comments

Hi on the https://github.com/Oshlack/Lace/wiki/Usage-Documentation page the command python Lace.py Example/Example_Genome.fasta Example/clusters.txt -t -o Test does not work because it should be python3 Lace.py Example/Example_Transcripts.fasta Example/clusters.txt -t -o Test

Oct 04 '19 08:10 smoretti

Also the Checker.py example is wrong: Should be python3 Checker.py --SuperFasta SuperDuper.fasta --SuperGff SuperDuper.gff I guess.

But in my case it returns:

Finding list of genes
Producing match to super transcript
Can't open SuperFiles/GeneB.fasta to read: No such file or directory
Producing match to super transcript
Can't open SuperFiles/GeneA.fasta to read: No such file or directory
ANNOCHECKED ---- 0.5776822566986084 seconds ----

Oct 04 '19 08:10 smoretti