Steven Meisler

In regards to QSIPrep, the preprocessing in HBN-POD2 (https://www.biorxiv.org/content/10.1101/2022.02.24.481303v1.full) is good, even though it ran on an older version of QSIPrep. Post-processing reconstruction (e.g. tractography) could use newer versions to...

Were your input data rigidly aligned to MNI, and is the `tracking_format` you specified the same as when you ran `Tracking`?

Hi, it might help to know a little more about how you are using TractSeg. 0) For the subjects that go through tractometry successfully, do their outputs look correct? 1)...

Thanks for reporting all of that; I don't really know what may be the cause or what to suggest at this point, besides potentially sending the data to see if...

I am sorry to reopen this after so long, but I am using the newest DWIConvert (5.3.0) and am experiencing the same issue after using DTIPrep 1.2.10.

Yes, no previous outputs and fresh working directory. What's also weird is that sMRIPrep ran fine on these subjects before (0.8.1 , so FS v6). To be clear these outputs...

At least on my end (using fMRIPrep), a `/` directory was not even created. The `fsaverage` directory is there.

> --cleanenv is not a recognized argument for smriprep-docker `--cleanenv` is a singularity option (not a smriprep/fmriprep argument) which makes sure none of your local environmental variables are brought into...

I have not (my scratch directory was in temporary storage that got wiped) but I will work on replicating this.

Hello, I ran the command in `/fmriprep_22_0_wf/single_subject__wf/anat_preproc_wf/surface_recon_wf/autorecon1/command.txt`: ``` INFO: hi-res volumes are conformed to the min voxel size fsr-checkxopts: Command not found. Linux openmind7 3.10.0-1062.el7.x86_64 #1 SMP Wed Aug 7...