Pawel Krawczyk

icon company International Institute of Molecular and Cell BIology icon location Warsaw, Poland icon location I am interested in the analysis of all kinds of NGS data, from metagenomics and bacterial genomics, to transcriptomics, TAILseq and long-read sequencing data

Results 3 issues of Pawel Krawczyk

pairwise comparisons - allow setting the p.value threshold (alpha)

Hi, sometimes (in my case, especially when doing ggbetweenstats) there are so many significant pairwise comparisons that showing them makes a plot very crowdy. However, there are comparisons that could...

enhancement 🔥

RNA training

Hi, as bonito is now recommended over taiyaki (which is now unsupported and recommended not to use), are there any short-term plans to include RNA models in bonito? Taiyaki was...

ignore stripping of primer(barcode) sequences

I've modified the code to allow for leaving the barcode sequence in the demultiplexed output as sometimes it is desired to. This is provided as the additional option "-s"