slvrshot
slvrshot
## Expected Behavior ## Current Behavior ## Possible Solution ## Steps to Reproduce 1. Work computer works fine loading .gml 2. Home PC gets angry 3. Java is updated 4....
## Problem description I followed the brew install commands listed in the read me. Everything seems to run fine but when I try to run make it throws this error....
I was curious if ariba could download a cgMSLT scheme from pubMLST or do I have to create a custom database for all 1.5K loci?
Hi I have 116 Whole genomes that I initially ran through ParSNP and now I'm running through Gubbins to remove recombination. I am just curious why it is taking so...
Hello Martin, In your paper it is stated that ARIBA...."4) identifies SNP frequency in multicopy genes, which has been traditionally difficult to resolve due to the complexities of de novo...
 I've successfully completed the phyloseq tutorial on converting and visualizing DeSeq2 data but I can't figure out how to do something more in line with the figure above. Any...
Could you explain a little bit how to download a cgMLST scheme for Neisseria spp.. for use with this tool? I'm interested in doing this for a few samples but...
The maps package leaves a lot to be desired since it only displays the lower 48 in the continental USA. It will show hawaii but it will be zoomed out...
I created a similar pipeline to get abundance of other AMR genes using some of your groups previous methodology of ublast and diamond blastx and obtained absolute counts. Since the...
The numbers in the tabular file are normalized numbers based on ARG per 16S copy or cell number. What I would like to do is get the actual raw counts...