slvrshot

What is GenomeTools listed as via Homebrew? Is it brew install genometools or brew install gt? Nevermind I see its brew install genome tools. I wish this was clarified in...

@eam12 I have this same question. Did you ever figure it out?

@andrewjpage Hello. I was curious if this was ever implemented?

> From the wiki: > > ``` > 3. gene | 1=gene, 0=non-coding (same as metadata column 2) > 4. var_only | 1=variant only, 0=presence/absence (same as metadata column 3)...

@jameshadfield Could you explain how this works? I am not familiar with phylocanvas. Thanks!

Oh wow this is an old one. I would have told my younger self to post code. I'm sure it can be done using some sort of boxplot or barplot...

Martin thanks for the explanation. So to be clear it can give an estimate of the ratio of copies with a particular mutation? For example I have the following...I am...

> If you take a look at the [indexer docs](https://sting.readthedocs.io/en/latest/indexer/), they should look very familiar since you're a stringMLST user. If you have a scheme you've built with stringMLST, you...

> Oh, and merry Christmas 🙂 I figured there was some bash script I could use to pull the allele sequences out! Thanks so much I will test this later...

> Oh, and merry Christmas 🙂 Hello again! That worked. However I'm having issues with creating the database. First I tried your demo but I get an error message: ```...