Stephen Larson
Stephen Larson
@HebaF Have a look at the sheet called "Ion Channel To Neuron". We want to do the same thing in the "Ion Channel To Body Muscle" tab. Currently the formulas...
http://www.biorxiv.org/content/early/2015/11/16/031971.abstract
@mwatts15 asked: >What do you think a PyOpenWorm WikiData integration should look like? Are you thinking of WikiData purely as a database for the same data that's currently written out...
Great catch. John White also just pointed us at this paper. Direct links: [Table from the reference](http://elifesciences.org/content/4/e12432v2#tbl1) [Dynamic spreadsheet containing OpenWorm neurotransmitter info](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit) See more on the process of how...
@mwatts15 There is still desire from the community to use the original NeuronConnect.xls data set because of differing perspectives on the methodologies used to assemble them. So I would say...
@rgerkin Can we set up a time in a couple weeks to discuss this?
@rgerkin I think what you are describing is what we want to do with #18 -- running the cell-level LEMS file through an optimization process to pick desired parameters.
I'm pretty sure the effect of activating the light sensitive channels can be modeled as a current injection.
OK really interesting points raised by all here. It has taken me a while to get to digesting it all @VahidGh -- Interesting point on Markov based models of ion...
Thanks to @adokhugi for these changes!