Stephen Larson
Stephen Larson
@tarelli I can help to do this but will need some guidance on what geppetto stack to incorporate
Just wanted to point to this effort to combine the main docker image with a jupyter notebook here: https://github.com/slarson/OpenWorm/blob/jupyter-notebook/notebook/Dockerfile
- [ ] Run Sibernetic with c302 in the loop - [ ] Parse the results from Sibernetic about body position that came out - [ ] Transform results into...
@tarelli OK here's a first cut of how the plot should look. Also want to loop in @rgerkin here to see if he could help with producing this, in particular...
Geppetto could be used to produce this if https://github.com/openworm/org.geppetto.simulator.sph/issues/40 can be done.
Sibernetic will be supporting outputting a graph like this as an option, per this issue: https://github.com/openworm/sibernetic/issues/119
@Ichoran @cheelee Would it be possible to get a hold of the data as a line chart for tap withdrawal that @JimHokanson mentioned above?
@Ichoran Thanks! Took us a little while to get back to this, but I think it will be best if @raminmh @lungd weigh in on this, as they have been...
Updating the roadmap: The following points can proceed in parallel: **Sibernetic** - [ ] Show pilot example of parsing output from Sibernetic about body position (@a-palanov) - [ ] Transform...
@a-palyanov Can we run a simulation now where the worm crawls forward, simulate fake "tap" reversal, and then goes backwards for a time to get a starting "rig" going that...