Steven Marygold
Steven Marygold
Hi Lynn, As suggested in email, I'm making this general ticket to link to a list of new/split terms required by FlyBase: https://docs.google.com/spreadsheets/d/10QCbrpJcyIaOoZaJuEKQuleomcqTKbxSYlIJwgH-38U/edit#gid=0 (Note I’ve included recent individual tickets for...
EC:7.-.-.- (translocases - https://enzyme.expasy.org/EC/7.-.-.-) is currently an xref on: id: GO:0005215 name: transporter activity def: "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of...
* **GO term ID and label for which you request a new superclass** diacylglycerol diphosphate phosphatase activity GO:0000810 (EC:3.1.3.81) * **New superclass (parent) suggested** Currently has parent of GO:0016462 pyrophosphatase...
I'm looking at 7 terms under 'deaminase activity (GO:0019239)' that have a direct parentage of 'hydrolase activity' -> 'deaminase activity' ONLY. (ie. unlike most deaminase terms, they are not also...
id: GO:0070224 name: sulfide:quinone oxidoreductase activity def: "Catalysis of the reaction: hydrogen sulfide + a quinone = S0 + a hydroquinone." [MetaCyc:R17-RXN] synonym: "sulfide-quinone reductase activity" EXACT [MetaCyc:MONOMER-12314] synonym: "sulphide:quinone...
Please remove EC:1.4.3.22 and EC:1.4.3.4 as sources in the definition of this term: id: GO:0008131 name: primary amine oxidase activity def: "Catalysis of the reaction: a primary amine + H2O...
EC:3.6.1.30 associated with the following GO term is obsolete: id: GO:0050072 name: m7G(5')pppN diphosphatase activity namespace: molecular_function def: "Catalysis of the reaction: 7-methylguanosine 5'-triphospho-5'-polynucleotide + H2O = 7-methylguanosine 5'-phosphate +...
* **GO term ID and Label** GO:0097573 glutathione oxidoreductase activity Def: Catalysis of the reaction: protein-S-S-glutathione + glutathione-SH = protein-SH + glutathione-S-S-glutathione. PMID:18992757 * **Reason for deprecation** I'm not sure...
Current rRNA hierarchy looks like this: ``` rRNA |_large_subunit_rRNA |_rRNA_21S |_rRNA_23S |_rRNA_25S |_rRNA_28S |_rRNA_5S |_rRNA_5_8S |_mt_rRNA |_small_subunit_rRNA |_rRNA_16S |_rRNA_18S ``` (though see request for improvements in #493) In contrast, the...
Once the tRNA (SO:0000253) revisions have been addressed (#583), they should be mirrored under tRNA_gene (SO:0001272).