Sangjin Lee

winnowmap PacBio CCS alignment

4

To whom it may concern, I am writing to inquire whether the authors of the program had compared the results from winnowmap -ax map-pb and -ax asm20 bam file. Minimap2...

error in tracking subreads and preads?

1

To whom it may concern, I have been successful in completing both FALCON and FALCON_UNZIP. Thereafter, I wanted to apply pilon to the cns_p_ctg.fa and cns_h_ctg.fa using the preads, which...

consensus-calling with arrow for contigs absent from all_p_ctg.fa but present in p_ctg.fa after falcon_unzip

1

I have been successfully able to run FALCON (PacificBiosciences/FALCON#514) for the human genome and I am now performing FALCON_UNZIP. FALCON_UNZIP has also been successful, but there were some contigs absent...

[BUG] All access to this object has been disabled

1

When I click the link http://hicfiles.tc4ga.com.s3.amazonaws.com/public/Juicebox/Juicebox_1.9.8.dmg to download Juicebox Version 1.9.8 I see the following error on the webpage ``` This XML file does not appear to have any style...

PacBio CCS reads support

3

I was wondering if bamsnap supports PacBio CCS reads. When I use bamsnap with my CCS bam files, it produces the following error: ```bash Traceback (most recent call last): File...

consensus-calling with arrow for contigs absent from all_p_ctg.fa but present in p_ctg.fa

1

I have been successfully able to run FALCON (https://github.com/PacificBiosciences/FALCON/issues/514) for the human genome and I am now performing FALCON_UNZIP. FALCON_UNZIP has also been successful, but there were some contigs absent...