Sebastian Jaenicke

This might be useful here: https://github.com/DLTcollab/sse2neon

Can you comment on performance when using BLAST databases instead of .dmnd?

Our in-house pipeline submits diamond jobs to a DRMAA-based compute cluster, with input sequences split into chunks and one thread per job; multiple jobs being scheduled to the very same...

https://github.com/Ecogenomics/GTDBTk/blob/master/gtdbtk/external/tigrfam_search.py#L141 Default pipe buffer size is 64k on Linux; if `hmmsearch` produces more than 64k of output, the pipe will block, thus causing the hang. Since stdout/stderr isn't used anyway,...

To build, I had to extend package.json, adding `"rwlock": "^5.0.0"`.

related: https://github.com/rabix/composer/issues/450 https://github.com/rabix/composer/pull/455

Not sure if there should be an exception; I'd prefer just displaying an empty chart.

You need to install Blast+.

Sample workflow e.g. at https://github.com/MGX-metagenomics/cwl/blob/master/metagenome-assembly-pipeline.cwl - `cwltool --validate` still reports success even if the `InlineJavascriptRequirement` is removed.

Thanks for the fast reply; I guess any kind of meaningful message and an exit code != 0 (but no segfault) would be fine.