guppy_parameter_optimiser
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sirselim
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
These are SUP results from RTX8000 `gpu,gpu_memory,gpu_memory_used,gpu_driver_version,cuda_version,guppy_version,guppy_model,chunk_size,chunks_per_runner,num_basecallers,runners_per_device,samples_per_second Quadro RTX 8000,8192,76.63484928000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2000,1024,4,12,3.97501e+06 Quadro RTX 8000,8192,40.96000000000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2000,1536,4,12, Quadro RTX 8000,8192,95.25575680000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2000,160,4,12,2.80052e+06 Quadro RTX 8000,8192,97.77561600000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2000,256,4,12,4.0642e+06 Quadro RTX 8000,8192,101.03439360000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2**000,512,4,12,4.15801e+06** Quadro RTX 8000,8192,107.52000000000000000000,520.61.05,11.8,6.0.6+8a98bbc,sup,2000,786,4,12,3.92427e+06 `
Hi, I just got guppy up and running on a machine with a 6000 Ada GPU. Here are the results of running it: gpu,gpu_memory,gpu_memory_used,gpu_driver_version,cuda_version,guppy_version,guppy_model,chunk_size,chunks_per_runner,num_basecallers,runners_per_device,samples_per_second NVIDIA RTX 6000 Ada Generation,49140,7043.38362,525.85.05,12.0,6.3.9+799d5bd,fast,2000,160,,,8.14516e+07 NVIDIA...
Thanks for providing this! I ran this on a few of our machines and wanted to add our results on the 4090: gpu,gpu_memory,gpu_memory_used,gpu_driver_version,cuda_version,guppy_version,guppy_model,chunk_size,chunks_per_runner,num_basecallers,runners_per_device,samples_per_second NVIDIA GeForce RTX 4090,24564,0,525.85.12,12.0,6.3.8+d9e0f64,fast,2000,160,4,8,7.773e+07 NVIDIA GeForce RTX...
