Simon van Heeringen
Simon van Heeringen
On some installs `genomepy annotation` fails: ``` gtfToGenePred: error while loading shared libraries: libssl.so.1.0.0: cannot open shared object file: No such file or directory ``` This is likely an error...
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Currently, the codeclimate is used to check code, which is good. However, in my opinion the "code complexity" cutoff is currently way too strict. While I think checking code complexity...
FTP downloads [don't work](https://blog.travis-ci.com/2018-07-23-the-tale-of-ftp-at-travis-ci) on Travis, which means many Ensembl tests cannot be run. Switch to CircleCI to enable all tests.
If the TPM/expression file contains NA's ANANSE will throw an error (#114). These should be removed before creating the expression network. Checking for `None` should fix it.
Unrelated to PR. But the amount of (unexpected to me) filtering is strange, this is one example. I think this is something we should take a look at and think...
To consider.. not sure about this yet. One thing to consider is maybe sqlite r-tree. It's the perfect datastructure for this (linking proximalish peaks with tss) I think, and should...