Sierra Moxon

one solution here, short of fixing prefixcommons, is to overwrite the skos URL in the model itself.

in Biolink Model 3.0 we remove biolink:acts_upstream_of_or_within_negative_effect and most of the subclasses of regulates in favor of just supporting "regulates" as a predicate. Maybe we can re-run the boomer analysis...

Hi @RichardBruskiewich - were you thinking of this in the form of more tests in this repo? :)

- make sure all predicates have opposites and inverses. - to go between KGX and linkml processing (aka: not in the scope of the KGX nor linkml, specific to biolink-model)....

@putmantime @RichardBruskiewich - is this a blocker for Monarch?

note: we have an association for taxa->taxa: ``` taxon to taxon association: is_a: association defining_slots: - subject - predicate - object slot_usage: subject: range: organism taxon relation: values_from: - ro...

@PhillipsOwen - thanks for reaching out! Could you please give me more context to how you are using endogenous in this triple? ie: an endogenous decrease in activity?

@cmungall - do you think this is still a relevant idea for us to work towards?

[CHEBI.txt](https://github.com/biolink/biolink-model/files/7508448/CHEBI.txt) Attached is a file from Chris B. that shows mappings to CHEBI from node normalizer

@kevinschaper - on ingest, do you have enough data to determine the match quality of most xrefs?