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Those logs are empty :(
(I've been trying to run this step with my own data, to see if I get a similar error, but I'll need a bit more time. Sorry for the delay.)...
Closing this issue now. Feel free to start a new issue if you encounter another problem!
Hey Jake, this might be an incompatibility with the newer pandas versions. I'll try to release a new version of ANANSE this week. If you wanna get started sooner, try...
I've also pinned dask to version 2023.9.1 in the next version of ANANSE (which should become available about an hour or so after [this PR](https://github.com/bioconda/bioconda-recipes/pull/44277) is merged!)
Could you see if #241 fixes the issue? Unfortunately, I can't reproduce your issue! Here's what I tried: scratch_12.py ```python #!/usr/bin/env python3 import logging import genomepy logging.basicConfig(level=logging.INFO, format="This is a...
I'm hoping the new version magically fixes this :crossed_fingers:
``` # sklearn: Prefer dual=False when n_samples > n_features. # X is in shape (n_samples, n_features) dual = X.shape[0]
Thank you for sharing this! I was able to reproduce the error with test data, but it depended on the input fasta! ```python from gimmemotifs.motif import Motif, read_motifs from gimmemotifs.fasta...
I only got a segfault with a long sequence, but not with a short sequence! Perhaps I'm missing something though, so I made a PRs that _might_ fix either cases:...