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> I want to know whether it's precise to use narrowPeak of CHIP seq data as regions to do ananse binding or ATAC narrow peak works better? Can I use...
If you give ANANSE narrowPeak and BAM files, the regions are scaled. If you give ANANSE a `pfmscorefile`, the regions are not scaled. I think that the easiest way to...
Hey Roki, I think something has gone wrong upstream. Could you add the complete ANANSE binding log? Preferably as text/code :) I will check if this problem is on our...
Found it! Downgrade `matplotlib` to version 3.7 and it should work again
Here's a minimal reproducible example. Tested in a clean conda environment with snakemake 6.8.0 Runs with `rm -f a1.txt; rm -rf .snakemake; snakemake --cores 1` ``` rule all: input: "b.txt"...
And here's a reproducible example matching our use-case! Runs with `rm -r a.txt; rm -f b.txt; rm -f c.txt; rm .snakemake; snakemake --cores 2` ``` rule all: input: "c.txt", checkpoint...
I found one more edge case while making the above example (sorry!) the following code works fine: ``` rule all: input: "b.txt" checkpoint a: output: "a.txt" shell: "touch {output}" rule...
This issue had been fixed :)
Closing this issue now. Feel free to reopen it if the problem was not fixed!
Closing this issue now. Feel free to reopen it if the problem was not fixed!