Jon Cluce

In light of https://github.com/bids-standard/bids-specification/pull/981, specifically the `_motion` suffix, https://github.com/bids-standard/bids-specification/blob/843f4508018a2a8a3aecef3b26cfee399c3e39c8/src/schema/objects/suffixes.yaml#L672-L676 should https://github.com/bids-standard/bids-specification/blob/1c79cbc19f7ab9b99f38376978b37d78c8ce5759/src/derivatives/functional-derivatives.md?plain=1#L258-L269 revert to `_timeseries`, change to something unambiguous, or will the sidecar and context be sufficient to differentiate the different...

Hi @dseeburger3, thanks for reaching out. The [first error here](https://github.com/FCP-INDI/C-PAC/issues/2113#key_mask_boolean) looks like you're mixing C-PAC versions. The `mask_boolean` key ```YAML anatomical_preproc: brain_extraction: FSL-BET: mask_boolean: ``` was removed [in 1.8.7](https://fcp-indi.github.io/docs/latest/user/rnotes#latest-release-version-1-8-7-beta-may-03-2024), so...

As to what you're trying to do, I think you should be able to, and hopefully we can help with a little more information. For the [second screenshot above](https://github.com/FCP-INDI/C-PAC/issues/2113#crash2), if...

Is ```YAML anatomical_preproc: brain_extraction: run: Off using: ['BET'] ``` your whole pipeline config? Since [C-PAC v1.8.5](https://github.com/FCP-INDI/C-PAC/blob/96db8b0b65ab1d5f55fb3b895855af34d72c17e4/CHANGELOG.md#185---2023-05-24) unspecified values come from the "blank" preconfig, which includes https://github.com/FCP-INDI/C-PAC/blob/96db8b0b65ab1d5f55fb3b895855af34d72c17e4/CPAC/resources/configs/pipeline_config_blank.yml#L184-L185, so that could be...

If this doesn't fix the problem, I'll try to replicate and see what's going on here, but it might simply be the BIDS-entity-without-a-key `T1w` in the middle of the mask's...

Possibly related: #2103

> Hi @shnizzedy , Coming back to this. I added the correlation test screenshot above. I was thinking if the splitting of dimensions is better in the `function` itself or...

It looks like the underlying issue here is that C-PAC is synching the number of available cores (`--n_cpus`) to the number of available cores per participant, so it will (while...

I'm working on this in my forks [shnizzedy/C-PAC@`regression/reg-suite`](https://github.com/shnizzedy/C-PAC/tree/regression/reg-suite) & [shnizzedy/slurm_testing@`regression/after_runs`](https://github.com/shnizzedy/slurm_testing/tree/regression/after_runs) so there aren't a bunch of test CI runs going on [FCP-INDI](https://github.com/FCP-INDI)

The dimensions are different in the raw data? ```BASH $ fslinfo sub-NDARFP909LY1_ses-HBNsiteCBIC_acq-fMRI_dir-AP_epi.nii.gz data_type INT16 dim1 90 dim2 90 dim3 60 dim4 1 datatype 4 pixdim1 2.400000 pixdim2 2.400000 pixdim3 2.399998...