Jon Cluce

Results 92 issues of Jon Cluce

> Number 7 in Singularity's [Support for Docker and OCI: Best Practices](https://sylabs.io/guides/3.7/user-guide/singularity_and_docker#best-practices) is > > Ensure calls to `ldconfig` are executed towards the end of `build` specifications (e.g., `Dockerfile`), so...

## Summary Fixes #2982. Maybe fixes #3527. All tests pass locally. 8/13 jobs pass [on Travis](https://travis-ci.com/github/shnizzedy/nipype/builds/212518190). The Travis failures seem unrelated to the changes in this PR. ## List of...

## Related to Related to #1987 by @sgiavasis Related to #2110 by @shnizzedy ## Description The version-matched [C-PAC variant images](https://fcp-indi.github.io/docs/v1.8.7/user/versions#variants) have been dragged along with each C-PAC version since they...

## Related to Related to [:snake: PEP 518 – Specifying Minimum Build System Requirements for Python Projects](https://peps.python.org/pep-0518/) Related to [:octocat:/childmindresearch/nodeblock-testing](https://github.com/childmindresearch/nodeblock-testing) ## Description 1. Adds a `pyproject.toml` file with just a...

devops
python

## Description When creating [C-PAC_pre-commit_examples](https://github.com/childmindresearch/C-PAC_pre-commit_examples) and [GH00011 Contributing to C-PAC: using pre-commit](https://docs.google.com/document/d/1WmKICJAMSIUlsFmUFgvbD-Ev9YmTQ9B9xPGbjVpxi8c), I found real small-scope changes to make. This PR represents the style portion of those changes, as illustrated...

style

## Fixes Fixes #2002 by @shnizzedy Merge after #2088 ## Description When creating [C-PAC_pre-commit_examples](https://github.com/childmindresearch/C-PAC_pre-commit_examples) and [GH00011 Contributing to C-PAC: using pre-commit](https://docs.google.com/document/d/1WmKICJAMSIUlsFmUFgvbD-Ev9YmTQ9B9xPGbjVpxi8c), I found real small-scope changes to make. This PR...

docs
user-reported
RBC

I think we should sit on this one until after 1.8.7 is out so we can put it through the ringer before we release it. ## Fixes Fixes [cmi-cnl.slack#user_support@p1698686578542339](https://cmi-cnl.slack.com/archives/CBM95TMEW/p1698686578542339) by...

improvement
engine
enhancement

### Describe the bug When we upgraded dependencies for 1.8.6 in #1969, we removed the node installation of bids-validator since we're also installing the python library. [This comment on Neurostars](https://neurostars.org/t/running-an-older-version-of-c-pac-v1-3-0/29178/3)...

bug
user-reported

**Related problem** If a BIDS directory contains sidecar information split between file-level and directory-level, C-PAC produces outputs like the following if the parameters C-PAC is looking for are in a...

improvement
support
BIDS

> Why don't we default https://github.com/FCP-INDI/C-PAC/blob/26ebd1ebb88b15229577757befda121b8e4490ab/CPAC/utils/interfaces/function/function.py#L163 as `True` (or even not make it an option, and just always have Function nodes "as module"s)? > > I.e., when would we want...